#include<stdio.h>
#define n 3
struct body
{
    double p[3];//position
    double v[3];//velocity
    double a[3];//acceleration
    double radius;
    double mass;
};

struct body bodies[n];

int main()
{
    int a, b;
     for(a = 0; a < n; a++)
     {
            for(b = 0; b < 3; b++)
            {
                bodies[a].p[b] = 0;
                bodies[a].v[b] = 0;
                bodies[a].a[b] = 0;
            }
            bodies[a].mass = 0;
            bodies[a].radius = 1.0;
     }

    return 0;
}

this works fine. your question was not very clear by the way, so match the layout of your source code with the above.